# /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/bin/netMHCpan -f /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-05-10-02-41-19-25128300.txt -p -a HLA-A02:01
# Fri May 10 10:41:19 2019
# User: root
# PWD : /usr/local/apache/htdocs/gz/prediction/cubic-horizontal
# Host: Linux iZbp17uatlyfuye40s01ymZ 3.10.0-693.21.1.el7.x86_64 x86_64
# -f /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-05-10-02-41-19-25128300.txt File name with input
# -p 1 Use peptide input
# -a HLA-A02:01 HLA allele
# Command line parameters set to:
# [-rdir filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64 Home directory for NetMHpan
# [-syn filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/synlist.bin Synaps file
# [-v] 0 Verbose mode
# [-dirty] 0 Dirty mode, leave tmp dir+files
# [-tdir filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpanXXXXXX Temporary directory (made with mkdtemp)
# [-hlapseudo filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/MHC_pseudo.dat File with HLA pseudo sequences
# [-hlaseq filename] File with full length HLA sequences
# [-a line] HLA-A02:01 HLA allele
# [-f filename] /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-05-10-02-41-19-25128300.txt File name with input
# [-w] 0 w option for webface
# [-s] 0 Sort output on descending affinity
# [-p] 1 Use peptide input
# [-rth float] 0.500000 Rank Threshold for high binding peptides
# [-rlt float] 2.000000 Rank Threshold for low binding peptides
# [-l string] 8,9,10,11 Peptide length [8-11] (multiple length with ,)
# [-xls] 0 Save output to xls file
# [-xlsfile filename] NetMHCpan_out.xls Filename for xls dump
# [-t float] -99.900002 Threshold for output
# [-thrfmt filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/threshold/%s.thr.%s Format for threshold filenames
# [-expfix] 0 Exclude prefix from synlist
# [-version filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/version File with version information
# [-inptype int] 0 Input type [0] FASTA [1] Peptide
# [-listMHC] 0 Print list of alleles included in netMHCpan
# [-allname filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/allelenames File with print names for alleles
# [-BA] 0 Make Binding affinity prediction
# NetMHCpan version 4.0
# Tmpdir made /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpanqWM712
# Input is in PEPTIDE format
# Make Eluted ligand likelihood predictions
HLA-A02:01 : Distance to training data 0.000 (using nearest neighbor HLA-A02:01)
# Rank Threshold for Strong binding peptides 0.500
# Rank Threshold for Weak binding peptides 2.000
-----------------------------------------------------------------------------------
Pos HLA Peptide Core Of Gp Gl Ip Il Icore Identity Score %Rank BindLevel
-----------------------------------------------------------------------------------
1 HLA-A*02:01 ALWDVPSPA ALWDVPSPA 0 0 0 0 0 ALWDVPSPA PEPLIST 0.9072160 0.0592 <= SB
1 HLA-A*02:01 VLFTFVLLL VLFTFVLLL 0 0 0 0 0 VLFTFVLLL PEPLIST 0.6947230 0.2434 <= SB
1 HLA-A*02:01 YLDVDLHPA YLDVDLHPA 0 0 0 0 0 YLDVDLHPA PEPLIST 0.8570490 0.0996 <= SB
1 HLA-A*02:01 GLLCLTLFV GLLCLTLFV 0 0 0 0 0 GLLCLTLFV PEPLIST 0.4720720 0.5740 <= WB
1 HLA-A*02:01 KLLTKPWDV KLLTKPWDV 0 0 0 0 0 KLLTKPWDV PEPLIST 0.8748190 0.0797 <= SB
1 HLA-A*02:01 GLLCISIMI GLLCISIMI 0 0 0 0 0 GLLCISIMI PEPLIST 0.3961390 0.7429 <= WB
1 HLA-A*02:01 YMPTVIEEL YMPTVIEEL 0 0 0 0 0 YMPTVIEEL PEPLIST 0.9147620 0.0557 <= SB
1 HLA-A*02:01 VLDDGIYRI VLDDGIYRI 0 0 0 0 0 VLDDGIYRI PEPLIST 0.9924260 0.0063 <= SB
1 HLA-A*02:01 LLLTLLATV LLLTLLATV 0 0 0 0 0 LLLTLLATV PEPLIST 0.6046430 0.3494 <= SB
1 HLA-A*02:01 KLAEAIFKL KLAEAIFKL 0 0 0 0 0 KLAEAIFKL PEPLIST 0.9917900 0.0068 <= SB
1 HLA-A*02:01 KMDIGVPLL KMDIGVPLL 0 0 0 0 0 KMDIGVPLL PEPLIST 0.8974380 0.0666 <= SB
1 HLA-A*02:01 TLAVFLLLI TLAVFLLLI 0 0 0 0 0 TLAVFLLLI PEPLIST 0.2268650 1.3413 <= WB
1 HLA-A*02:01 IIFILLMLV IIFILLMLV 0 0 0 0 0 IIFILLMLV PEPLIST 0.1408040 1.9834 <= WB
1 HLA-A*02:01 GLLFMILTV GLLFMILTV 0 0 0 0 0 GLLFMILTV PEPLIST 0.6923120 0.2456 <= SB
1 HLA-A*02:01 LLLGLMILL LLLGLMILL 0 0 0 0 0 LLLGLMILL PEPLIST 0.6038090 0.3506 <= SB
1 HLA-A*02:01 MILAVVITL MILAVVITL 0 0 0 0 0 MILAVVITL PEPLIST 0.5734250 0.3928 <= SB
1 HLA-A*02:01 VILAGPIPV VILAGPIPV 0 0 0 0 0 VILAGPIPV PEPLIST 0.7813280 0.1637 <= SB
1 HLA-A*02:01 ADLMGYIPLV ALMGYIPLV 0 1 1 0 0 ADLMGYIPLV PEPLIST 0.8121940 0.1365 <= SB
1 HLA-A*02:01 SMVGNWAKV SMVGNWAKV 0 0 0 0 0 SMVGNWAKV PEPLIST 0.4943860 0.5349 <= WB
1 HLA-A*02:01 SLLAPGAKQNV SLLAPGANV 0 7 2 0 0 SLLAPGAKQNV PEPLIST 0.2056060 1.4571 <= WB
1 HLA-A*02:01 CLVDYPYRL CLVDYPYRL 0 0 0 0 0 CLVDYPYRL PEPLIST 0.8054710 0.1425 <= SB
1 HLA-A*02:01 FLLLADARV FLLLADARV 0 0 0 0 0 FLLLADARV PEPLIST 0.8671320 0.0908 <= SB
1 HLA-A*02:01 FLTRVEAQL FLTRVEAQL 0 0 0 0 0 FLTRVEAQL PEPLIST 0.7690370 0.1743 <= SB
1 HLA-A*02:01 YLVTRHADV YLVTRHADV 0 0 0 0 0 YLVTRHADV PEPLIST 0.2793510 1.0931 <= WB
1 HLA-A*02:01 LLCPAGHAV LLCPAGHAV 0 0 0 0 0 LLCPAGHAV PEPLIST 0.4110920 0.7095 <= WB
1 HLA-A*02:01 KLVALGINAV KLVAGINAV 0 4 1 0 0 KLVALGINAV PEPLIST 0.5775570 0.3871 <= SB
1 HLA-A*02:01 YLVAYQATV YLVAYQATV 0 0 0 0 0 YLVAYQATV PEPLIST 0.9459420 0.0389 <= SB
1 HLA-A*02:01 SLMAFTAAV SLMAFTAAV 0 0 0 0 0 SLMAFTAAV PEPLIST 0.9369530 0.0444 <= SB
1 HLA-A*02:01 ILAGYGAGV ILAGYGAGV 0 0 0 0 0 ILAGYGAGV PEPLIST 0.9119860 0.0570 <= SB
1 HLA-A*02:01 VLSDFKTWL VLSDFKTWL 0 0 0 0 0 VLSDFKTWL PEPLIST 0.7593870 0.1835 <= SB
1 HLA-A*02:01 RLIVFPDLGV RLIFPDLGV 0 3 1 0 0 RLIVFPDLGV PEPLIST 0.4323180 0.6595 <= WB
1 HLA-A*02:01 ALYDVVTKL ALYDVVTKL 0 0 0 0 0 ALYDVVTKL PEPLIST 0.9861390 0.0106 <= SB
1 HLA-A*02:01 ILMTHFFSI ILMTHFFSI 0 0 0 0 0 ILMTHFFSI PEPLIST 0.8672670 0.0907 <= SB
1 HLA-A*02:01 SLMSFTAAV SLMSFTAAV 0 0 0 0 0 SLMSFTAAV PEPLIST 0.9510610 0.0354 <= SB
1 HLA-A*02:01 WMMFMVSQV WMMFMVSQV 0 0 0 0 0 WMMFMVSQV PEPLIST 0.4001430 0.7339 <= WB
-----------------------------------------------------------------------------------
Protein PEPLIST. Allele HLA-A*02:01. Number of high binders 25. Number of weak binders 10. Number of peptides 35
-----------------------------------------------------------------------------------