# /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/bin/netMHCpan -f /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-05-10-03-03-31-97563300.txt -p -a HLA-A02:01
# Fri May 10 11:03:31 2019
# User: root
# PWD : /usr/local/apache/htdocs/gz/prediction/cubic-horizontal
# Host: Linux iZbp17uatlyfuye40s01ymZ 3.10.0-693.21.1.el7.x86_64 x86_64
# -f /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-05-10-03-03-31-97563300.txt File name with input
# -p 1 Use peptide input
# -a HLA-A02:01 HLA allele
# Command line parameters set to:
# [-rdir filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64 Home directory for NetMHpan
# [-syn filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/synlist.bin Synaps file
# [-v] 0 Verbose mode
# [-dirty] 0 Dirty mode, leave tmp dir+files
# [-tdir filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpanXXXXXX Temporary directory (made with mkdtemp)
# [-hlapseudo filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/MHC_pseudo.dat File with HLA pseudo sequences
# [-hlaseq filename] File with full length HLA sequences
# [-a line] HLA-A02:01 HLA allele
# [-f filename] /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-05-10-03-03-31-97563300.txt File name with input
# [-w] 0 w option for webface
# [-s] 0 Sort output on descending affinity
# [-p] 1 Use peptide input
# [-rth float] 0.500000 Rank Threshold for high binding peptides
# [-rlt float] 2.000000 Rank Threshold for low binding peptides
# [-l string] 8,9,10,11 Peptide length [8-11] (multiple length with ,)
# [-xls] 0 Save output to xls file
# [-xlsfile filename] NetMHCpan_out.xls Filename for xls dump
# [-t float] -99.900002 Threshold for output
# [-thrfmt filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/threshold/%s.thr.%s Format for threshold filenames
# [-expfix] 0 Exclude prefix from synlist
# [-version filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/version File with version information
# [-inptype int] 0 Input type [0] FASTA [1] Peptide
# [-listMHC] 0 Print list of alleles included in netMHCpan
# [-allname filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/allelenames File with print names for alleles
# [-BA] 0 Make Binding affinity prediction
# NetMHCpan version 4.0
# Tmpdir made /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpaniLmRVw
# Input is in PEPTIDE format
# Make Eluted ligand likelihood predictions
HLA-A02:01 : Distance to training data 0.000 (using nearest neighbor HLA-A02:01)
# Rank Threshold for Strong binding peptides 0.500
# Rank Threshold for Weak binding peptides 2.000
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Pos HLA Peptide Core Of Gp Gl Ip Il Icore Identity Score %Rank BindLevel
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1 HLA-A*02:01 SLLMWITQC SLLMWITQC 0 0 0 0 0 SLLMWITQC PEPLIST 0.1768340 1.6555 <= WB
1 HLA-A*02:01 GLYDGMEHL GLYDGMEHL 0 0 0 0 0 GLYDGMEHL PEPLIST 0.9914530 0.0071 <= SB
1 HLA-A*02:01 KVAELVHFL KVAELVHFL 0 0 0 0 0 KVAELVHFL PEPLIST 0.9075180 0.0590 <= SB
1 HLA-A*02:01 PLFQVPEPV PLFQVPEPV 0 0 0 0 0 PLFQVPEPV PEPLIST 0.2404170 1.2733 <= WB
1 HLA-A*02:01 STPPPGTRV STPPPGTRV 0 0 0 0 0 STPPPGTRV PEPLIST 0.0660550 3.2661
1 HLA-A*02:01 KASEKIFYV KASEKIFYV 0 0 0 0 0 KASEKIFYV PEPLIST 0.7571760 0.1856 <= SB
1 HLA-A*02:01 FLPSDFFPSV FLPSDFPSV 0 5 1 0 0 FLPSDFFPSV PEPLIST 0.8715930 0.0842 <= SB
1 HLA-A*02:01 FLLTRILTI FLLTRILTI 0 0 0 0 0 FLLTRILTI PEPLIST 0.9070270 0.0592 <= SB
1 HLA-A*02:01 FLGGHVAVA FLGGHVAVA 0 0 0 0 0 FLGGHVAVA PEPLIST 0.8319730 0.1194 <= SB
1 HLA-A*02:01 RMLGDVMAV RMLGDVMAV 0 0 0 0 0 RMLGDVMAV PEPLIST 0.9778390 0.0134 <= SB
1 HLA-A*02:01 RLNELLAYV RLNELLAYV 0 0 0 0 0 RLNELLAYV PEPLIST 0.9784480 0.0132 <= SB
1 HLA-A*02:01 FLGDDPSPA FLGDDPSPA 0 0 0 0 0 FLGDDPSPA PEPLIST 0.7764900 0.1679 <= SB
1 HLA-A*02:01 IILEFFLMV IILEFFLMV 0 0 0 0 0 IILEFFLMV PEPLIST 0.6217690 0.3256 <= SB
1 HLA-A*02:01 MLLALIAVL MLLALIAVL 0 0 0 0 0 MLLALIAVL PEPLIST 0.4818370 0.5569 <= WB
1 HLA-A*02:01 YLLPRRGPRL YLLPRGPRL 0 4 1 0 0 YLLPRRGPRL PEPLIST 0.5846320 0.3773 <= SB
1 HLA-A*02:01 RLWHYPCTV RLWHYPCTV 0 0 0 0 0 RLWHYPCTV PEPLIST 0.8094580 0.1389 <= SB
1 HLA-A*02:01 GLNAVAYYR GLNAVAYYR 0 0 0 0 0 GLNAVAYYR PEPLIST 0.0076540 9.7598
1 HLA-A*02:01 ILDSFDPLV ILDSFDPLV 0 0 0 0 0 ILDSFDPLV PEPLIST 0.9632290 0.0204 <= SB
1 HLA-A*02:01 GLQDCTMLV GLQDCTMLV 0 0 0 0 0 GLQDCTMLV PEPLIST 0.8237340 0.1261 <= SB
1 HLA-A*02:01 CLIDYPYRL CLIDYPYRL 0 0 0 0 0 CLIDYPYRL PEPLIST 0.9158600 0.0552 <= SB
1 HLA-A*02:01 WLARGLWWI WLARGLWWI 0 0 0 0 0 WLARGLWWI PEPLIST 0.4180470 0.6935 <= WB
1 HLA-A*02:01 ALRGLPIRY ALRGLPIRY 0 0 0 0 0 ALRGLPIRY PEPLIST 0.0115080 8.1163
1 HLA-A*02:01 GVAGALVAFK GVAGALVAF 0 0 0 0 0 GVAGALVAF PEPLIST 0.0013880 19.2582
1 HLA-A*02:01 RVCEKMALY RVCEKMALY 0 0 0 0 0 RVCEKMALY PEPLIST 0.0027060 14.8733
1 HLA-A*02:01 VTLTHPITK VTLTHPITK 0 0 0 0 0 VTLTHPITK PEPLIST 0.0011560 20.6736
1 HLA-A*02:01 SQIGAGVYK SQIGAGVYK 0 0 0 0 0 SQIGAGVYK PEPLIST 0.0069190 10.2000
1 HLA-A*02:01 STYGWNLVR STYGWNLVR 0 0 0 0 0 STYGWNLVR PEPLIST 0.0037860 13.0550
1 HLA-A*02:01 TSGSPIIDK TSGSPIIDK 0 0 0 0 0 TSGSPIIDK PEPLIST 0.0000960 50.0000
1 HLA-A*02:01 RQLANAIFK RQLANAIFK 0 0 0 0 0 RQLANAIFK PEPLIST 0.0019250 17.0111
1 HLA-A*02:01 TYSTYGKFL TYSTYGKFL 0 0 0 0 0 TYSTYGKFL PEPLIST 0.0006250 26.1695
1 HLA-A*02:01 VIAPAVQTNW VIAPAVQTW 0 8 1 0 0 VIAPAVQTNW PEPLIST 0.0016100 18.2152
1 HLA-A*02:01 RYLLLCLLI RYLLLCLLI 0 0 0 0 0 RYLLLCLLI PEPLIST 0.0002860 34.9231
1 HLA-A*02:01 DYPYRLWHF DYPYRLWHF 0 0 0 0 0 DYPYRLWHF PEPLIST 0.0002310 37.6667
1 HLA-A*02:01 QYSDRRWCF QYSDRRWCF 0 0 0 0 0 QYSDRRWCF PEPLIST 0.0001830 40.7143
1 HLA-A*02:01 TYLALIATF TYLALIATF 0 0 0 0 0 TYLALIATF PEPLIST 0.0026460 14.9868
1 HLA-A*02:01 QYIFTGQPL QYIFTGQPL 0 0 0 0 0 QYIFTGQPL PEPLIST 0.0010000 21.8321
1 HLA-A*02:01 RPHERNGFTVL RPHEGFTVL 0 4 2 0 0 RPHERNGFTVL PEPLIST 0.0002910 34.7308
1 HLA-A*02:01 TPRVTGGGAM TPRTGGGAM 0 3 1 0 0 TPRVTGGGAM PEPLIST 0.0001770 41.1667
1 HLA-A*02:01 GPLVAGGLL GPLVAGGLL 0 0 0 0 0 GPLVAGGLL PEPLIST 0.0004480 29.7000
1 HLA-A*02:01 GPRLGVRAT GPRLGVRAT 0 0 0 0 0 GPRLGVRAT PEPLIST 0.0000560 58.4211
1 HLA-A*02:01 LPGCSFSIF LPGCSFSIF 0 0 0 0 0 LPGCSFSIF PEPLIST 0.0000340 66.0000
1 HLA-A*02:01 HSKKKCDEL HSKKKCDEL 0 0 0 0 0 HSKKKCDEL PEPLIST 0.0001070 48.3333
1 HLA-A*02:01 YAQMWSLMY YAQMWSLMY 0 0 0 0 0 YAQMWSLMY PEPLIST 0.0010600 21.3740
1 HLA-A*02:01 KQIANELNY KQIANELNY 0 0 0 0 0 KQIANELNY PEPLIST 0.0140140 7.3910
1 HLA-A*02:01 RQMEGEGVL RQMEGEGVL 0 0 0 0 0 RQMEGEGVL PEPLIST 0.1233510 2.2074
1 HLA-A*02:01 HPNIEEVAL HPNIEEVAL 0 0 0 0 0 HPNIEEVAL PEPLIST 0.0019220 17.0222
1 HLA-A*02:01 EPEPDVAVL EPEPDVAVL 0 0 0 0 0 EPEPDVAVL PEPLIST 0.0015780 18.3587
1 HLA-A*02:01 TPMSDWPPY TPMSDWPPY 0 0 0 0 0 TPMSDWPPY PEPLIST 0.0003280 33.3333
1 HLA-A*02:01 LPTTGEIPF LPTTGEIPF 0 0 0 0 0 LPTTGEIPF PEPLIST 0.0002110 38.8235
1 HLA-A*02:01 LPIWARPDY LPIWARPDY 0 0 0 0 0 LPIWARPDY PEPLIST 0.0001090 48.0000
1 HLA-A*02:01 MMLPATLAF MMLPATLAF 0 0 0 0 0 MMLPATLAF PEPLIST 0.2503270 1.2276 <= WB
1 HLA-A*02:01 VATTFVTPM VATTFVTPM 0 0 0 0 0 VATTFVTPM PEPLIST 0.0014850 18.7758
1 HLA-A*02:01 TPEGIIPSM TPEGIIPSM 0 0 0 0 0 TPEGIIPSM PEPLIST 0.0022320 16.0194
1 HLA-A*02:01 NPEIEDDIF NPEIEDDIF 0 0 0 0 0 NPEIEDDIF PEPLIST 0.0001150 47.2500
1 HLA-A*02:01 CPTQGEAVL CPTQGEAVL 0 0 0 0 0 CPTQGEAVL PEPLIST 0.0003500 32.5517
1 HLA-A*02:01 MLIPTAMAF MLIPTAMAF 0 0 0 0 0 MLIPTAMAF PEPLIST 0.3188190 0.9581 <= WB
1 HLA-A*02:01 HPASAWTLY HPASAWTLY 0 0 0 0 0 HPASAWTLY PEPLIST 0.0005660 27.1852
1 HLA-A*02:01 IANQAAILM IANQAAILM 0 0 0 0 0 IANQAAILM PEPLIST 0.0098140 8.7406
1 HLA-A*02:01 GEMPSTEDL GEMPSTEDL 0 0 0 0 0 GEMPSTEDL PEPLIST 0.0033260 13.7584
1 HLA-A*02:01 QEGAMHTAL QEGAMHTAL 0 0 0 0 0 QEGAMHTAL PEPLIST 0.0003200 33.6296
1 HLA-A*02:01 LEFEALGFM LEFEALGFM 0 0 0 0 0 LEFEALGFM PEPLIST 0.0023630 15.6883
1 HLA-A*02:01 KPWDVIPMV KPWDVIPMV 0 0 0 0 0 KPWDVIPMV PEPLIST 0.1062690 2.4335
1 HLA-A*02:01 ATGPILTLW ATGPILTLW 0 0 0 0 0 ATGPILTLW PEPLIST 0.0034260 13.6055
1 HLA-A*02:01 WSIHAHHQW WSIHAHHQW 0 0 0 0 0 WSIHAHHQW PEPLIST 0.0005580 27.3333
1 HLA-A*02:01 MEITAEWLW MEITAEWLW 0 0 0 0 0 MEITAEWLW PEPLIST 0.0012630 19.9451
1 HLA-A*02:01 LTAAVLLLI LTAAVLLLI 0 0 0 0 0 LTAAVLLLI PEPLIST 0.0630610 3.3529
1 HLA-A*02:01 IGIGILLTW IGIGILLTW 0 0 0 0 0 IGIGILLTW PEPLIST 0.0018980 17.1111
1 HLA-A*02:01 IGLTSRATW IGLTSRATW 0 0 0 0 0 IGLTSRATW PEPLIST 0.0005120 28.2174
1 HLA-A*02:01 FRCPRRFCF FRCPRRFCF 0 0 0 0 0 FRCPRRFCF PEPLIST 0.0002380 37.2778
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Protein PEPLIST. Allele HLA-A*02:01. Number of high binders 15. Number of weak binders 6. Number of peptides 69
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