# /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/bin/netMHCpan -f /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-05-10-05-24-48-64875500.txt -p -a HLA-A01:01 # Fri May 10 13:24:48 2019 # User: root # PWD : /usr/local/apache/htdocs/gz/prediction/cubic-horizontal # Host: Linux iZbp17uatlyfuye40s01ymZ 3.10.0-693.21.1.el7.x86_64 x86_64 # -f /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-05-10-05-24-48-64875500.txt File name with input # -p 1 Use peptide input # -a HLA-A01:01 HLA allele # Command line parameters set to: # [-rdir filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64 Home directory for NetMHpan # [-syn filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/synlist.bin Synaps file # [-v] 0 Verbose mode # [-dirty] 0 Dirty mode, leave tmp dir+files # [-tdir filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpanXXXXXX Temporary directory (made with mkdtemp) # [-hlapseudo filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/MHC_pseudo.dat File with HLA pseudo sequences # [-hlaseq filename] File with full length HLA sequences # [-a line] HLA-A01:01 HLA allele # [-f filename] /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-05-10-05-24-48-64875500.txt File name with input # [-w] 0 w option for webface # [-s] 0 Sort output on descending affinity # [-p] 1 Use peptide input # [-rth float] 0.500000 Rank Threshold for high binding peptides # [-rlt float] 2.000000 Rank Threshold for low binding peptides # [-l string] 8,9,10,11 Peptide length [8-11] (multiple length with ,) # [-xls] 0 Save output to xls file # [-xlsfile filename] NetMHCpan_out.xls Filename for xls dump # [-t float] -99.900002 Threshold for output # [-thrfmt filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/threshold/%s.thr.%s Format for threshold filenames # [-expfix] 0 Exclude prefix from synlist # [-version filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/version File with version information # [-inptype int] 0 Input type [0] FASTA [1] Peptide # [-listMHC] 0 Print list of alleles included in netMHCpan # [-allname filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/allelenames File with print names for alleles # [-BA] 0 Make Binding affinity prediction # NetMHCpan version 4.0 # Tmpdir made /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpancdvqje # Input is in PEPTIDE format # Make Eluted ligand likelihood predictions HLA-A01:01 : Distance to training data 0.000 (using nearest neighbor HLA-A01:01) # Rank Threshold for Strong binding peptides 0.500 # Rank Threshold for Weak binding peptides 2.000 ----------------------------------------------------------------------------------- Pos HLA Peptide Core Of Gp Gl Ip Il Icore Identity Score %Rank BindLevel ----------------------------------------------------------------------------------- 1 HLA-A*01:01 NSTSTWVTY NSTSTWVTY 0 0 0 0 0 NSTSTWVTY PEPLIST 0.5977610 0.3706 <= SB 1 HLA-A*01:01 LTDALALGM LTDALALGM 0 0 0 0 0 LTDALALGM PEPLIST 0.8758800 0.1221 <= SB 1 HLA-A*01:01 TTEAILPEY TTEAILPEY 0 0 0 0 0 TTEAILPEY PEPLIST 0.9898350 0.0112 <= SB 1 HLA-A*01:01 TSEIQLTDY TSEIQLTDY 0 0 0 0 0 TSEIQLTDY PEPLIST 0.9620610 0.0435 <= SB 1 HLA-A*01:01 ISSTPFAEY ISSTPFAEY 0 0 0 0 0 ISSTPFAEY PEPLIST 0.9037420 0.0938 <= SB 1 HLA-A*01:01 VIDLEPISY VIDLEPISY 0 0 0 0 0 VIDLEPISY PEPLIST 0.9731560 0.0298 <= SB 1 HLA-A*01:01 KTDWLPMTV KTDWLPMTV 0 0 0 0 0 KTDWLPMTV PEPLIST 0.5749180 0.3952 <= SB 1 HLA-A*01:01 ITEAELTGY ITEAELTGY 0 0 0 0 0 ITEAELTGY PEPLIST 0.9866570 0.0169 <= SB 1 HLA-A*01:01 ITASILLWY ITASILLWY 0 0 0 0 0 ITASILLWY PEPLIST 0.8939340 0.1032 <= SB 1 HLA-A*01:01 ASDRMGMGV ASDRMGMGV 0 0 0 0 0 ASDRMGMGV PEPLIST 0.3870520 0.6963 <= WB 1 HLA-A*01:01 VTTWENVPY VTTWENVPY 0 0 0 0 0 VTTWENVPY PEPLIST 0.6074050 0.3602 <= SB 1 HLA-A*01:01 MTDDIGMGV MTDDIGMGV 0 0 0 0 0 MTDDIGMGV PEPLIST 0.9045490 0.0930 <= SB 1 HLA-A*01:01 KVDAIDGEY KVDAIDGEY 0 0 0 0 0 KVDAIDGEY PEPLIST 0.9743040 0.0287 <= SB 1 HLA-A*01:01 LVQIENLEY LVQIENLEY 0 0 0 0 0 LVQIENLEY PEPLIST 0.8363530 0.1517 <= SB 1 HLA-A*01:01 DTSEVHWNY DTSEVHWNY 0 0 0 0 0 DTSEVHWNY PEPLIST 0.8887750 0.1086 <= SB 1 HLA-A*01:01 LTDYGALTL LTDYGALTL 0 0 0 0 0 LTDYGALTL PEPLIST 0.8175790 0.1641 <= SB 1 HLA-A*01:01 ATDALMTGY ATDALMTGY 0 0 0 0 0 ATDALMTGY PEPLIST 0.9959790 0.0041 <= SB 1 HLA-A*01:01 RTEAVLHVY RTEAVLHVY 0 0 0 0 0 RTEAVLHVY PEPLIST 0.9805690 0.0229 <= SB 1 HLA-A*01:01 LTETWKQQDY LTETWKQQY 0 8 1 0 0 LTETWKQQDY PEPLIST 0.8597870 0.1348 <= SB 1 HLA-A*01:01 FTDNSTPPA FTDNSTPPA 0 0 0 0 0 FTDNSTPPA PEPLIST 0.5360660 0.4476 <= SB 1 HLA-A*01:01 LADARVSAY LADARVSAY 0 0 0 0 0 LADARVSAY PEPLIST 0.9738360 0.0292 <= SB 1 HLA-A*01:01 TTDHVGVPTY TTDHVGVTY 0 7 1 0 0 TTDHVGVPTY PEPLIST 0.9903710 0.0099 <= SB ----------------------------------------------------------------------------------- Protein PEPLIST. Allele HLA-A*01:01. Number of high binders 21. Number of weak binders 1. Number of peptides 22 -----------------------------------------------------------------------------------