# /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/bin/netMHCpan -f /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-06-03-11-31-57-61918200.txt -p -a HLA-B58:01 # Mon Jun 3 19:31:57 2019 # User: root # PWD : /usr/local/apache/htdocs/gz/prediction/cubic-horizontal # Host: Linux iZbp17uatlyfuye40s01ymZ 3.10.0-693.21.1.el7.x86_64 x86_64 # -f /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-06-03-11-31-57-61918200.txt File name with input # -p 1 Use peptide input # -a HLA-B58:01 HLA allele # Command line parameters set to: # [-rdir filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64 Home directory for NetMHpan # [-syn filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/synlist.bin Synaps file # [-v] 0 Verbose mode # [-dirty] 0 Dirty mode, leave tmp dir+files # [-tdir filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpanXXXXXX Temporary directory (made with mkdtemp) # [-hlapseudo filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/MHC_pseudo.dat File with HLA pseudo sequences # [-hlaseq filename] File with full length HLA sequences # [-a line] HLA-B58:01 HLA allele # [-f filename] /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file/peptide_19-06-03-11-31-57-61918200.txt File name with input # [-w] 0 w option for webface # [-s] 0 Sort output on descending affinity # [-p] 1 Use peptide input # [-rth float] 0.500000 Rank Threshold for high binding peptides # [-rlt float] 2.000000 Rank Threshold for low binding peptides # [-l string] 8,9,10,11 Peptide length [8-11] (multiple length with ,) # [-xls] 0 Save output to xls file # [-xlsfile filename] NetMHCpan_out.xls Filename for xls dump # [-t float] -99.900002 Threshold for output # [-thrfmt filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/threshold/%s.thr.%s Format for threshold filenames # [-expfix] 0 Exclude prefix from synlist # [-version filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/version File with version information # [-inptype int] 0 Input type [0] FASTA [1] Peptide # [-listMHC] 0 Print list of alleles included in netMHCpan # [-allname filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/allelenames File with print names for alleles # [-BA] 0 Make Binding affinity prediction # NetMHCpan version 4.0 # Tmpdir made /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpanpZ2El7 # Input is in PEPTIDE format # Make Eluted ligand likelihood predictions HLA-B58:01 : Distance to training data 0.000 (using nearest neighbor HLA-B58:01) # Rank Threshold for Strong binding peptides 0.500 # Rank Threshold for Weak binding peptides 2.000 ----------------------------------------------------------------------------------- Pos HLA Peptide Core Of Gp Gl Ip Il Icore Identity Score %Rank BindLevel ----------------------------------------------------------------------------------- 1 HLA-B*58:01 ATSVLAGL ATS-VLAGL 0 0 0 3 1 ATSVLAGL PEPLIST 0.0180330 8.3707 1 HLA-B*58:01 RGINDRNFW RGINDRNFW 0 0 0 0 0 RGINDRNFW PEPLIST 0.8446290 0.0936 <= SB 1 HLA-B*58:01 VSFIEFVGW VSFIEFVGW 0 0 0 0 0 VSFIEFVGW PEPLIST 0.9054530 0.0508 <= SB 1 HLA-B*58:01 RAWNSGYEW RAWNSGYEW 0 0 0 0 0 RAWNSGYEW PEPLIST 0.9906640 0.0042 <= SB 1 HLA-B*58:01 RSLFGGMSW RSLFGGMSW 0 0 0 0 0 RSLFGGMSW PEPLIST 0.9900460 0.0045 <= SB 1 HLA-B*58:01 RVLEMVEDW RVLEMVEDW 0 0 0 0 0 RVLEMVEDW PEPLIST 0.9690020 0.0157 <= SB 1 HLA-B*58:01 SIASWAIKW SIASWAIKW 0 0 0 0 0 SIASWAIKW PEPLIST 0.8117720 0.1227 <= SB 1 HLA-B*58:01 RAQAPPPSW RAQAPPPSW 0 0 0 0 0 RAQAPPPSW PEPLIST 0.9918290 0.0037 <= SB 1 HLA-B*58:01 CTTPCSGSW CTTPCSGSW 0 0 0 0 0 CTTPCSGSW PEPLIST 0.3783080 0.7834 <= WB 1 HLA-B*58:01 ATGPVLTLW ATGPVLTLW 0 0 0 0 0 ATGPVLTLW PEPLIST 0.9922600 0.0035 <= SB 1 HLA-B*58:01 RVLKMVEPW RVLKMVEPW 0 0 0 0 0 RVLKMVEPW PEPLIST 0.8892680 0.0617 <= SB 1 HLA-B*58:01 KAVHADMGYW KAVHADMYW 0 7 1 0 0 KAVHADMGYW PEPLIST 0.9318670 0.0303 <= SB 1 HLA-B*58:01 ATGPISTLW ATGPISTLW 0 0 0 0 0 ATGPISTLW PEPLIST 0.9935880 0.0029 <= SB 1 HLA-B*58:01 IGIGILLTW IGIGILLTW 0 0 0 0 0 IGIGILLTW PEPLIST 0.8926710 0.0598 <= SB 1 HLA-B*58:01 ATGPITTLW ATGPITTLW 0 0 0 0 0 ATGPITTLW PEPLIST 0.9944850 0.0025 <= SB 1 HLA-B*58:01 MEITAEWLW MEITAEWLW 0 0 0 0 0 MEITAEWLW PEPLIST 0.4502110 0.6029 <= WB 1 HLA-B*58:01 ICSAVPVHW ICSAVPVHW 0 0 0 0 0 ICSAVPVHW PEPLIST 0.9100030 0.0472 <= SB 1 HLA-B*58:01 ATGPLTTLW ATGPLTTLW 0 0 0 0 0 ATGPLTTLW PEPLIST 0.9903980 0.0044 <= SB 1 HLA-B*58:01 ATGPILTLW ATGPILTLW 0 0 0 0 0 ATGPILTLW PEPLIST 0.9920690 0.0036 <= SB 1 HLA-B*58:01 RASFIEVKTC RSFIEVKTC 0 1 1 0 0 RASFIEVKTC PEPLIST 0.0462170 4.8196 1 HLA-B*58:01 VSSVNMVSRL VSSVNMVRL 0 7 1 0 0 VSSVNMVSRL PEPLIST 0.0629640 3.9445 1 HLA-B*58:01 IAVSTANIF IAVSTANIF 0 0 0 0 0 IAVSTANIF PEPLIST 0.6796150 0.2468 <= SB 1 HLA-B*58:01 GSSKIRWIVE GSSKIRIVE 0 6 1 0 0 GSSKIRWIVE PEPLIST 0.0037500 18.5922 1 HLA-B*58:01 PASIAARGYI ASIAARGYI 1 0 0 0 0 ASIAARGYI PEPLIST 0.0063330 14.4363 1 HLA-B*58:01 PASAWTLYAV ASAWTLYAV 1 0 0 0 0 ASAWTLYAV PEPLIST 0.0017390 26.4161 1 HLA-B*58:01 RAAVEDEEF RAAVEDEEF 0 0 0 0 0 RAAVEDEEF PEPLIST 0.7471420 0.1758 <= SB ----------------------------------------------------------------------------------- Protein PEPLIST. Allele HLA-B*58:01. Number of high binders 18. Number of weak binders 2. Number of peptides 26 -----------------------------------------------------------------------------------