# /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/bin/netMHCpan -f /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file1/pep2_19-05-28-01-44-23-5409100.txt -p -a HLA-A01:01
# Tue May 28 09:44:23 2019
# User: root
# PWD : /usr/local/apache/htdocs/gz/prediction/cubic-horizontal
# Host: Linux iZbp17uatlyfuye40s01ymZ 3.10.0-693.21.1.el7.x86_64 x86_64
# -f       /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file1/pep2_19-05-28-01-44-23-5409100.txt File name with input
# -p       1                    Use peptide input
# -a       HLA-A01:01           HLA allele
# Command line parameters set to:
#	[-rdir filename]     /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64 Home directory for NetMHpan
#	[-syn filename]      /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/synlist.bin Synaps file
#	[-v]                 0                    Verbose mode
#	[-dirty]             0                    Dirty mode, leave tmp dir+files
#	[-tdir filename]     /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpanXXXXXX Temporary directory (made with mkdtemp)
#	[-hlapseudo filename] /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/MHC_pseudo.dat File with HLA pseudo sequences
#	[-hlaseq filename]                        File with full length HLA sequences
#	[-a line]            HLA-A01:01           HLA allele
#	[-f filename]        /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file1/pep2_19-05-28-01-44-23-5409100.txt File name with input
#	[-w]                 0                    w option for webface
#	[-s]                 0                    Sort output on descending affinity
#	[-p]                 1                    Use peptide input
#	[-rth float]         0.500000             Rank Threshold for high binding peptides
#	[-rlt float]         2.000000             Rank Threshold for low binding peptides
#	[-l string]          8,9,10,11            Peptide length [8-11] (multiple length with ,)
#	[-xls]               0                    Save output to xls file
#	[-xlsfile filename]  NetMHCpan_out.xls    Filename for xls dump
#	[-t float]           -99.900002           Threshold for output
#	[-thrfmt filename]   /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/threshold/%s.thr.%s Format for threshold filenames
#	[-expfix]            0                    Exclude prefix from synlist
#	[-version filename]  /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/version File with version information
#	[-inptype int]       0                    Input type [0] FASTA [1] Peptide
#	[-listMHC]           0                    Print list of alleles included in netMHCpan
#	[-allname filename]  /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/Linux_x86_64/data/allelenames File with print names for alleles
#	[-BA]                0                    Make Binding affinity prediction

# NetMHCpan version 4.0

# Tmpdir made /usr/local/apache/htdocs/netMHCpan4/netMHCpan-4.0/tmp/netMHCpanePUR2w
Error. No Peptide entries  read from /usr/local/apache/htdocs/gz/prediction/cubic-horizontal/file1/pep2_19-05-28-01-44-23-5409100.txt